Package: MetAlyzer 1.2.0

Junyan Lu

MetAlyzer: Read and Analyze 'MetIDQ™' Software Output Files

The 'MetAlyzer' S4 object provides methods to read and reformat metabolomics data for convenient data handling, statistics and downstream analysis. The resulting format corresponds to input data of the Shiny app 'MetaboExtract' (<https://www.metaboextract.shiny.dkfz.de/MetaboExtract/>).

Authors:Qian-Wu Liao [aut], Luis Herfurth [aut], Christina Schmidt [aut], Nils Mechtel [aut], Hagen Gegner [aut], Alice Limonciel [aut], Julio Saez-Rodriguez [aut], Rüdiger Hell [aut], Junyan Lu [aut, cre], Gernot Poschet [aut]

MetAlyzer_1.2.0.tar.gz
MetAlyzer_1.2.0.zip(r-4.7-any)MetAlyzer_1.2.0.zip(r-4.6-any)MetAlyzer_1.2.0.zip(r-4.5-any)
MetAlyzer_1.2.0.tgz(r-4.6-any)MetAlyzer_1.2.0.tgz(r-4.5-any)
MetAlyzer_1.2.0.tar.gz(r-4.7-any)MetAlyzer_1.2.0.tar.gz(r-4.6-any)
MetAlyzer_1.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MetAlyzer/json (API)

# Install 'MetAlyzer' in R:
install.packages('MetAlyzer', repos = c('https://lu-group-ukhd.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nilsmechtel/metalyzer/issues

On CRAN:

Conda:

5.95 score 5 stars 9 scripts 341 downloads 20 exports 93 dependencies

Last updated from:793743572d. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE261
source / vignettesOK283
linux-releaseNOTE303
macos-releaseNOTE265
macos-oldrelNOTE251
windows-develNOTE242
windows-releaseNOTE239
windows-oldrelNOTE220
wasm-releaseOK176

Exports:aggregated_dataexample_mutation_data_xlexport_conc_valuesfilter_meta_datafilter_metabolitesload_demodata_biocratesload_rawdata_extractionlog2FCmetalyzer_colorspathwayplot_networkplot_scatterpolarityread_webidqrename_meta_datastart_appsummarize_conc_valuessummarize_quant_datatoy_diffresupdate_meta_data

Dependencies:abindaskpassbase64encBiobaseBiocGenericsbslibcachemclicommonmarkcowplotcpp11crosstalkcurldata.tableDelayedArraydigestdplyrevaluatefarverfastmapfontawesomefsgenericsGenomicRangesggplot2ggrepelgluegridExtragtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslopenxlsxotelpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfoshinysourcetoolsSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisviridisLitewithrxfunxtableXVectoryamlzip

R-package User Guide
Loading and Exploring Data | Import data from WebIDQ™ | MetAlyzer Plots | Scatter Plot | Pathway Network Visualization | Relevance and Interpretation: | Node Summarization and Representation: | Session information | Bibliography
Rendered fromuser_guide.Rmdusingknitr::rmarkdown

Last update: 2025-11-18
Started: 2025-08-27

Standard Metabolomics
Rendered fromshiny_app.Rmdusingknitr::rmarkdown

Last update: 2025-11-18
Started: 2025-08-27